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About Mission and Outline Background Activities For Community Message from Executive Director Toward the Development of Personalized Healthcare through the Promotion of Industry-Academia Collaboration Organization and Members Department of Community Medical Supports Department of Preventive Medicine and Epidemiology Department of Biobank Department of Integrative Genomics Department of Health Record Informatics Department of Education and Training Department of Public Relations and Planning General Affairs and Planning Sector Cohort Studies Sector Integrated Biobank Sector Integrated Omics Sector Group of Planning Group of Public Relations Group of Education and Training Group of Return of Genomic Results Center for Promotion of Cohort Studies Center for Health Survey Promotion Group of Brain Imaging and Research Group of Biobank Center for Biobank Utilization and Academia-Industry Partnership Group of Integrated Database Systems Group of Information Management for Genome-Cohort Study Group of Privacy Controls Group of Sequencing Group of Microarray-based Genotyping Group of Metabolomics Group of Metagenomics and Microbiome Group of Omics Data Analysis Center for Genome-Wide Association Study Office of Nihonbashi Branch Operation Center for Genome Platform Projects Policy Site Policy Social Media Policy Research Cohort Study and Biobank Community-Based Cohort Study (TMM CommCohort Study) Birth and Three-Generation Cohort Study (TMM BirThree Cohort Study) Integrative Genomics Publications Facilities and Equipment Researchers Specimen and Data Collection Ethical Issues ToMMo's Library News Timeline sitemap links access & contact JAPANESE Large Small A A Top ResearchExpanded version of Japanese genome reference panel including mitochondria and X chromosome is available online News Timeline all News Events Research Monthly archives 2024, April 2024, February 2024, January 2023, November 2023, October 2023, September 2023, August 2023, July 2023, June 2023, May 2023, April 2023, March 2023, January 2022, December 2022, November 2022, October 2022, September 2022, July 2022, May 2022, April 2022, January 2021, December 2021, November 2021, September 2021, August 2021, July 2021, June 2021, March 2021, January 2020, November 2020, October 2020, September 2020, August 2020, July 2020, June 2020, April 2020, March 2020, February 2020, January 2019, December 2019, November 2019, September 2019, August 2019, July 2019, May 2019, April 2019, March 2019, February 2019, January 2018, December 2018, November 2018, October 2018, September 2018, August 2018, July 2018, June 2018, May 2018, March 2018, February 2018, January 2017, December 2017, November 2017, October 2017, September 2017, August 2017, July 2017, June 2017, May 2017, March 2017, February 2017, January 2016, December 2016, November 2016, October 2016, September 2016, August 2016, July 2016, June 2016, May 2016, April 2016, March 2016, February 2016, January 2015, December 2015, November 2015, October 2015, September 2015, August 2015, July 2015, June 2015, May 2015, April 2015, March 2015, February 2015, January 2014, November 2014, October 2014, August 2014, July 2014, April 2014, March 2014, February 2014, January 2013, November 2013, August 2013, July 2013, June 2013, May 2013, April 2013, February 2013, January 2012, December 2012, November 2012, October 2012, September 2012, April 2012, March 2012, February Expanded version of Japanese genome reference panel including mitochondria and X chromosome is available online Research: 2018/06/25 On June 2018, we released our genome reference panel, 3.5KJPNv2 for a Japanese population of 3,552 individuals, which includes the allele frequencies of the population including X chromosome and mitochondria genome. The data on X chromosome and mitochondria for a large Japanese population is the first case. Previousely, we used iJGVD for data distribution, but it was now integrated into “jMorp” (Japanese Multi Omics Reference Panel). In jMorp, the genome data is provided by aiming to easy comparison with the other international data. In contrast to the last version of the panel, 3.5KJPN, which is released in September 2017 in iJGVD, we employed the GATK pipeline, which is now considered as an internationally standard method, for reanalysis for the sequencing data. The SNVs information over1% frequency is freely accessed without any data transfer agreement, while the rare variant information (lower than 1% in frequency) is accessible with the registration of ORCID ID and an agreement of data transfer. The details of the released data are described below: Outline of dataset (3.5KJPNv2) Contents of dataset The positions, allele frequencies, allele counts of all SNVs, mitochondria and X chromosome in the Japanese whole-genome reference panel from Tohoku Medical Megabank Project. About the reference genome The dataset is used the GRCh37/hg19 human reference genome for analysis of autosomes and X chromosome including some decoy sequences, which is the equivalent with those used in international 1000 genome project, and revised Cambridge Reference Sequence (rCRS) for analysis of mitochondria. Conditions of use Users can immediately download the data upon agreement to follow our user guidelines which include: 1) allowed to use only for non-profit (academic) purposes; 2) prohibition of identification of the cohort participants; 3) prohibition of contact with the cohort participants; etc. How to access You can go through the website called jMorp (Japanese Multi Omics Reference Panel) ,click “Genome”, then search your interest. Please see the blow link for more details. ・How to use jMorp You can access the data through https://jmorp.megabank.tohoku.ac.jp/201808/help/tutorial#genome Related Link The locations and allele frequencies of SNVs of 3,554 Japanese individuals by whole genome sequences is available (2017/09/28) News Timeline Tweet About Mission and Outline Background Activities For Community Message from Executive Director Organization and Members Policy Research Cohort Study and Biobank Integrative Genomics Publications Facilities and Equipment Researchers Ethical Issues Specimen &＃038; Data Collection ToMMo's Library News Timeline access & contact sitemap links JAPANESE Large Small A A Copyright(C) Tohoku University Tohoku Medical Megabank Organization All Rights Reserved. sitemap access & contact About Research Ethical Issues Specimen &＃038; Data Collection ToMMo's Library News Timeline access & contact sitemap links Japanese